PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G11010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 503aa    MW: 55613.8 Da    PI: 8.631
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G11010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.68.7e-15951143
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     kri  +s r  tf kRr g++KKA EL  LC++ v+v +++++
  LPERR01G11010.1  9 KRIAKNSTRRLTFKKRRSGLIKKARELASLCGIGVCVAVYGES 51
                     789999999********************************86 PP

2SRF-TF60.61.8e-19192232242
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 
                      ri n+  r  tf kRr g++KKA+ELS+LCd+e+++++f++
  LPERR01G11010.1 192 RIANDATRRATFKKRRRGLMKKASELSTLCDVEACLVVFGE 232
                      899************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.278151IPR002100Transcription factor, MADS-box
CDDcd002662.58E-24285No hitNo description
SuperFamilySSF554552.09E-20394IPR002100Transcription factor, MADS-box
PfamPF003196.9E-141051IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.913183232IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-21183242IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-11185205IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-25186277IPR002100Transcription factor, MADS-box
CDDcd002669.06E-32186267No hitNo description
PfamPF003199.9E-19192232IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-11205220IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-11220241IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MARNKIVLKR IAKNSTRRLT FKKRRSGLIK KARELASLCG IGVCVAVYGE SEVKPEVCPS  60
VPEVRTILSR FTTAPDVDRF KRVMNQEEFL QNRITMIQER MSKEDDETRE RDATVMLYEA  120
ATGKRPVADL NVGELTNLGL VIDERIKNLK EHIKRLGGEA PMEPSSLPTV PPYANVTGME  180
RNKRMKKIVL DRIANDATRR ATFKKRRRGL MKKASELSTL CDVEACLVVF GEGEVEPEAW  240
PSQEDARSVL DRFRALPETE QSKKMMNQED FLRQRIAKLQ DQVAKAVREN RERENKLLLH  300
DALAGKLGGY ESLTVEQLTS LDCAVNDKLR AVTARLAEMR AQNQVIPLPA LPAPPSMPMP  360
PPMPIQMTMM PPTSSLMTPV APLPYTNPVE LSPMGPPPGF EGIGQIHIQN QNQVQIQIQN  420
QNQNHEPDWL IDVARNGGDL GALVYSGYTG GNSNGASASN SNGASTSSGA GAGWPDMPDI  480
YNPGMLGGYC PWDDSAGPSF PPM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645781.12e-99PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0D9UZV40.0A0A0D9UZV4_9ORYZ; Uncharacterized protein
STRINGOB01G21750.17e-99(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.17e-26AGAMOUS-like 36